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Improved freshwater macroinvertebrate detection from eDNA through minimized non-target amplification
[article]
2020
bioRxiv
pre-print
DNA metabarcoding of freshwater communities typically relies on PCR amplification of a fragment of the mitochondrial cytochrome c oxidase (COI) gene with degenerate primers. The advantage of COI is its taxonomic resolution and the availability of an extensive reference database. However, when universal primers are used on environmental DNA (eDNA) isolated from stream water, macroinvertebrate read and OTU numbers are typically 'watered down', i.e. diluted, compared to whole specimen 'bulk
doi:10.1101/2020.04.27.063545
fatcat:k7awasmzdfccznseza3b36kwn4