Automatic MRI segmentation of para-pharyngeal fat pads using interactive visual feature space analysis for classification

Muhammad Laiq Ur Rahman Shahid, Teodora Chitiboi, Tetyana Ivanovska, Vladimir Molchanov, Henry Völzke, Lars Linsen
<span title="2017-02-14">2017</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="" style="color: black;">BMC Medical Imaging</a> </i> &nbsp;
Obstructive sleep apnea (OSA) is a public health problem. Detailed analysis of the para-pharyngeal fat pads can help us to understand the pathogenesis of OSA and may mediate the intervention of this sleeping disorder. A reliable and automatic para-pharyngeal fat pads segmentation technique plays a vital role in investigating larger data bases to identify the anatomic risk factors for the OSA. Methods: Our research aims to develop a context-based automatic segmentation algorithm to delineate the
more &raquo; ... fat pads from magnetic resonance images in a population-based study. Our segmentation pipeline involves texture analysis, connected component analysis, object-based image analysis, and supervised classification using an interactive visual analysis tool to segregate fat pads from other structures automatically. Results: We developed a fully automatic segmentation technique that does not need any user interaction to extract fat pads. Our algorithm is fast enough that we can apply it to population-based epidemiological studies that provide a large amount of data. We evaluated our approach qualitatively on thirty datasets and quantitatively against the ground truths of ten datasets resulting in an average of approximately 78% detected volume fraction and a 79% Dice coefficient, which is within the range of the inter-observer variation of manual segmentation results. Conclusion: The suggested method produces sufficiently accurate results and has potential to be applied for the study of large data to understand the pathogenesis of the OSA syndrome.
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="">doi:10.1186/s12880-017-0179-7</a> <a target="_blank" rel="external noopener" href="">pmid:28196476</a> <a target="_blank" rel="external noopener" href="">pmcid:PMC5309996</a> <a target="_blank" rel="external noopener" href="">fatcat:uhzk5acnv5gxdk5wecrequjeqa</a> </span>
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