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Software to reproduce the results presented in the paper "Benchmarking optimization methods for parameter estimation in large kinetic models". It includes two MATLAB toolboxes: AMICI and MEIGO, as well as MATLAB code to define the optimizations and to report the results as figures, tables, and summary files.doi:10.5281/zenodo.1160343 fatcat:3stn6yhcb5aytmhyqdqjsnk7pe