Benchmarking Optimization Methods For Parameter Estimation In Large Kinetic Models [article]

Alejandro F Villaverde, Fabian Fröhlich, Daniel Weindl, Jan Hasenauer, Julio R. Banga
2018 Zenodo  
Software to reproduce the results presented in the paper "Benchmarking optimization methods for parameter estimation in large kinetic models". It includes two MATLAB toolboxes: AMICI and MEIGO, as well as MATLAB code to define the optimizations and to report the results as figures, tables, and summary files.
doi:10.5281/zenodo.1160343 fatcat:3stn6yhcb5aytmhyqdqjsnk7pe