Reliability-Oriented bioinformatic networks visualization

Ahmet Emre Aladağ, Cesim Erten, Melih Sözdinler
2011 Computer applications in the biosciences : CABIOS  
We present our protein-protein interaction (PPI) network visualization system RobinViz (reliability-oriented bioinformatic networks visualization). Clustering the PPI network based on gene ontology (GO) annotations or biclustered gene expression data, providing a clustered visualization model based on a central/peripheral duality, computing layouts with algorithms specialized for interaction reliabilities represented as weights, completely automated data acquisition, processing are notable
more » ... res of the system. Availability: RobinViz is a free, open-source software protected under GPL. It is written in C++ and Python, and consists of almost 30 000 lines of code, excluding the employed libraries. Source code, user manual and other Supplementary Material are available for download at
doi:10.1093/bioinformatics/btr178 pmid:21478488 fatcat:jhhnnu7pcjampfnep3lz6frvcm