Tools for comparative protein structure modeling and analysis

N. Eswar
2003 Nucleic Acids Research  
The following resources for comparative protein structure modeling and analysis are described (http://salilab.org): MODELLER, a program for comparative modeling by satisfaction of spatial restraints; MODWEB, a web server for automated comparative modeling that relies on PSI-BLAST, IMPALA and MODELLER; MODLOOP, a web server for automated loop modeling that relies on MODELLER; MOULDER, a CPU intensive protocol of MODWEB for building comparative models based on distant known structures; MODBASE, a
more » ... comprehensive database of annotated comparative models for all sequences detectably related to a known structure; MODVIEW, a Netscape plugin for Linux that integrates viewing of multiple sequences and structures; and SNPWEB, a web server for structurebased prediction of the functional impact of a single amino acid substitution.
doi:10.1093/nar/gkg543 pmid:12824331 pmcid:PMC168950 fatcat:7h4x7vmc7rbh7nzath35dod2x4