Semantic concept-enriched dependence model for medical information retrieval

Sungbin Choi, Jinwook Choi, Sooyoung Yoo, Heechun Kim, Youngho Lee
2014 Journal of Biomedical Informatics  
Objective: In medical information retrieval research, semantic resources have been mostly used by expanding the original query terms or estimating the concept importance weight. However, implicit term-dependency information contained in semantic concept terms has been overlooked or at least underused in most previous studies. In this study, we incorporate a semantic concept-based termdependence feature into a formal retrieval model to improve its ranking performance. Design: Standardized
more » ... concept terms used by medical professionals were assumed to have implicit dependency within the same concept. We hypothesized that, by elaborately revising the ranking algorithms to favor documents that preserve those implicit dependencies, the ranking performance could be improved. The implicit dependence features are harvested from the original query using MetaMap. These semantic concept-based dependence features were incorporated into a semantic concept-enriched dependence model (SCDM). We designed four different variants of the model, with each variant having distinct characteristics in the feature formulation method. Measurements: We performed leave-one-out cross validations on both a clinical document corpus (TREC Medical records track) and a medical literature corpus (OHSUMED), which are representative test collections in medical information retrieval research. Results: Our semantic concept-enriched dependence model consistently outperformed other state-ofthe-art retrieval methods. Analysis shows that the performance gain has occurred independently of the concept's explicit importance in the query. Conclusion: By capturing implicit knowledge with regard to the query term relationships and incorporating them into a ranking model, we could build a more robust and effective retrieval model, independent of the concept importance.
doi:10.1016/j.jbi.2013.08.013 pmid:24036003 fatcat:e2dll5bvjbbazkcggar64zwhdu