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On using oscillating time-dependent restraints in MD simulation
2007
The use of time-dependent restraints in molecular simulation in order to generate a conformational ensemble for molecules that is in accordance with measured ensemble averages for particular observable quantities is investigated. Using a model system consisting of liquid butane and the cyclic peptide antamanide the reproduction of particular average 3 J-coupling constant values in a molecular dynamics simulation is analysed. It is shown that the multiple-valuedness and the sizeable gradients of
doi:10.3929/ethz-b-000003246
fatcat:7qhbyusnd5anhekhpbeg5byene