Fully automated brain resection cavity delineation for radiation target volume definition in glioblastoma patients using deep learning

Ekin Ermiş, Alain Jungo, Robert Poel, Marcela Blatti-Moreno, Raphael Meier, Urspeter Knecht, Daniel M. Aebersold, Michael K. Fix, Peter Manser, Mauricio Reyes, Evelyn Herrmann
<span title="2020-05-06">2020</span> <i title="Springer Science and Business Media LLC"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/2bagfcobavabhds3rtf4xkgv54" style="color: black;">Radiation Oncology</a> </i> &nbsp;
Automated brain tumor segmentation methods are computational algorithms that yield tumor delineation from, in this case, multimodal magnetic resonance imaging (MRI). We present an automated segmentation method and its results for resection cavity (RC) in glioblastoma multiforme (GBM) patients using deep learning (DL) technologies. Post-operative, T1w with and without contrast, T2w and fluid attenuated inversion recovery MRI studies of 30 GBM patients were included. Three radiation oncologists
more &raquo; ... nually delineated the RC to obtain a reference segmentation. We developed a DL cavity segmentation method, which utilizes all four MRI sequences and the reference segmentation to learn to perform RC delineations. We evaluated the segmentation method in terms of Dice coefficient (DC) and estimated volume measurements. Median DC of the three radiation oncologist were 0.85 (interquartile range [IQR]: 0.08), 0.84 (IQR: 0.07), and 0.86 (IQR: 0.07). The results of the automatic segmentation compared to the three different raters were 0.83 (IQR: 0.14), 0.81 (IQR: 0.12), and 0.81 (IQR: 0.13) which was significantly lower compared to the DC among raters (chi-square = 11.63, p = 0.04). We did not detect a statistically significant difference of the measured RC volumes for the different raters and the automated method (Kruskal-Wallis test: chi-square = 1.46, p = 0.69). The main sources of error were due to signal inhomogeneity and similar intensity patterns between cavity and brain tissues. The proposed DL approach yields promising results for automated RC segmentation in this proof of concept study. Compared to human experts, the DC are still subpar.
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/s13014-020-01553-z">doi:10.1186/s13014-020-01553-z</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/32375839">pmid:32375839</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/psazmvptejfjhoyuysjg2sh37y">fatcat:psazmvptejfjhoyuysjg2sh37y</a> </span>
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