Payao: a community platform for SBML pathway model curation

Y. Matsuoka, S. Ghosh, N. Kikuchi, H. Kitano
2010 Bioinformatics  
Payao is a community-based, collaborative web service platform for gene-regulatory and biochemical pathway model curation. The system combines Web 2.0 technologies and online model visualization functions to enable a collaborative community to annotate and curate biological models. Payao reads the models in Systems Biology Markup Language format, displays them with CellDesigner, a process diagram editor, which complies with the Systems Biology Graphical Notation, and provides an interface for
more » ... del enrichment (adding tags and comments to the models) for the access-controlled community members. Availability and implementation: Freely available for model curation service at http://www.payaologue.org. Web site implemented in Seaser Framework 2.0 with S2Flex2, MySQL 5.0 and Tomcat 5.5, with all major browsers supported.
doi:10.1093/bioinformatics/btq143 pmid:20371497 pmcid:PMC2865864 fatcat:lw7srogqnjbvtn2yensatqec7a