GenePro: a cytoscape plug-in for advanced visualization and analysis of interaction networks

J. Vlasblom, S. Wu, S. Pu, M. Superina, G. Liu, C. Orsi, S. J. Wodak
2006 Bioinformatics  
Motivation: Analyzing the networks of interactions between genes and proteins has become a central theme in systems biology. Versatile software tools for interactively displaying and analyzing these networks are therefore very much in demand. The public-domain open software environment Cytoscape has been developed with the goal of facilitating the design and development of such software tools by the scientific community. Results: We present GenePro, a plugin to Cytoscape featuring a set of
more » ... uring a set of versatile tools that greatly facilitates the visualization and analysis of protein networks derived from high-throughput interactions data and the validation of various methods for parsing these networks into meaningful functional modules. Availability: The GenePro plugin is available at the website http://
doi:10.1093/bioinformatics/btl356 pmid:16921162 fatcat:iljrlx6pmvfwfd4tymb6tascdm