Saccharothrix violaceirubra sp. nov., isolated from soil and plant litter

M. Otoguro, T. Tamura, K.-i. Suzuki, M. Hayakawa
2009 International Journal of Systematic and Evolutionary Microbiology  
Two strains of nocardioform actinomycetes, isolated from soil and plant litter in Yamanashi prefecture, Japan, showed substrate mycelium with purple to dark-red colours. 16S rRNA gene sequence analysis indicated that the organisms belonged to the family Actinosynnemataceae and were related closely to Saccharothrix strains (96.7-98.0 % sequence similarity). The isolates contained MK-9(H 4 ) as the predominant menaquinone, meso-diaminopimelic acid, galactose as the diagnostic whole-cell sugar and
more » ... phosphatidylethanolamine as the predominant polar lipid. Based on a combination of cultural, physiological and chemotaxonomic properties, in addition to the phylogenetic analysis and DNA-DNA hybridization data, we propose a novel species, Saccharothrix violaceirubra sp. nov., for these strains, with the type strain YU 692-1 T (5NBRC 102064 T 5KCTC 19326 T ). Abbreviations: meso-A 2 pm, meso-diaminopimelic acid; SEM, scanning electron microscopy. The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of Saccharothrix violaceirubra YU 692-1 T is AB284261. A scanning electron micrograph of the synnemata of strain YU 692-1 T is available with the online version of this paper.
doi:10.1099/ijs.0.003723-0 pmid:19502343 fatcat:o2vpdkh2hjb53afi4n52sbuory