BamView: viewing mapped read alignment data in the context of the reference sequence

T. Carver, U. Bohme, T. D. Otto, J. Parkhill, M. Berriman
2010 Bioinformatics  
BamView is an interactive Java application for visualizing the large amounts of data stored for sequence reads which are aligned against a reference genome sequence. It supports the BAM (Binary Alignment/Map) format. It can be used in a number of contexts including SNP calling and structural annotation. BamView has also been integrated into Artemis so that the reads can be viewed in the context of the nucleotide sequence and genomic features. Availability: BamView and Artemis are freely
more » ... e (under a GPL licence) for download (for MacOSX, UNIX and Windows) at:
doi:10.1093/bioinformatics/btq010 pmid:20071372 pmcid:PMC2828118 fatcat:ewjujt5lsbdcfpdhyaeb7mav4i