Chado Controller: advanced annotation management with a community annotation system

Valentin Guignon, Gaëtan Droc, Michael Alaux, Franc-Christophe Baurens, Olivier Garsmeur, Claire Poiron, Tim Carver, Mathieu Rouard, Stéphanie Bocs
2012 Computer applications in the biosciences : CABIOS  
We developed a controller that is compliant with the Chado database schema, GBrowse and genome annotation-editing tools such as Artemis and Apollo. It enables the management of public and private data, monitors manual annotation (with controlled vocabularies, structural and functional annotation controls) and stores versions of annotation for all modified features. The Chado controller uses PostgreSQL and Perl. Availability: The Chado Controller package is available for download at
more » ... and runs on any Unix-like operating system, and documentation is available at
doi:10.1093/bioinformatics/bts046 pmid:22285827 pmcid:PMC3315714 fatcat:xd755nerbnbmtpymvereiobw2a