A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf
.
Trinity RNA-Seq assembler performance optimization
2012
Proceedings of the 1st Conference of the Extreme Science and Engineering Discovery Environment on Bridging from the eXtreme to the campus and beyond - XSEDE '12
RNA-sequencing is a technique to study RNA expression in biological material. It is quickly gaining popularity in the field of transcriptomics. Trinity is a software tool that was developed for efficient de novo reconstruction of transcriptomes from RNA-Seq data. In this paper we first conduct a performance study of Trinity and compare it to previously published data from 2011. The version from 2011 is much slower than many other de novo assemblers and biologists have thus been forced to choose
doi:10.1145/2335755.2335842
fatcat:x657dpxjpreqdgky3pmlj34azy