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NMPP package is a bundle of user-customized tools based on established algorithms and methods to process selfdesigned NimbleGen microarray data. It features a command-linebased integrative processing procedure that comprises five major functional components, namely the raw microarray data parsing and integrating module, the array spatial effect smoothing and visualization module, the probe-level multi-array normalization module, the gene expression intensity summarization module and the genedoi:10.1093/bioinformatics/btl525 pmid:17038341 fatcat:f2kv7zvc7bcmzj4bdngd2irt2y