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RCy3: Network biology using Cytoscape from within R
2019
F1000Research
RCy3 is an R package in Bioconductor that communicates with Cytoscape via its REST API, providing access to the full feature set of Cytoscape from within the R programming environment. RCy3 has been redesigned to streamline its usage and future development as part of a broader Cytoscape Automation effort. Over 100 new functions have been added, including dozens of helper functions specifically for intuitive data overlay operations. Over 40 Cytoscape apps have implemented automation support so
doi:10.12688/f1000research.20887.3
fatcat:rb7y3qtpxjes5cdmfbrosm7rku