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EXPLORING PROTEIN FOLDING TRAJECTORIES USING GEOMETRIC SPANNERS
We describe the 3-D structure of a protein using geometric spanners -geometric graphs with a sparse set of edges where paths approximate the n 2 inter-atom distances. The edges in the spanner pick out important proximities in the structure, labeling a small number of atom pairs or backbone region pairs as being of primary interest. Such compact multiresolution views of proximities in the protein can be quite valuable, allowing, for example, easy visualization of the conformation over the entiredoi:10.1142/9789812702456_0005 fatcat:zipbbnv4mrbl3okz44m3zopbme