GITIRBio: A Semantic and Distributed Service Oriented- Architecture for Bioinformatics Pipeline

Luis F. Castillo, Germán López-Gartner, Gustavo A. Isaza, Mariana Sánchez, Jeferson Arango, Daniel Agudelo-Valencia, Sergio Castaño
2015 Journal of Integrative Bioinformatics  
SummaryThe need to process large quantities of data generated from genomic sequencing has resulted in a difficult task for life scientists who are not familiar with the use of command-line operations or developments in high performance computing and parallelization. This knowledge gap, along with unfamiliarity with necessary processes, can hinder the execution of data processing tasks. Furthermore, many of the commonly used bioinformatics tools for the scientific community are presented as
more » ... e presented as isolated, unrelated entities that do not provide an integrated, guided, and assisted interaction with the scheduling facilities of computational resources or distribution, processing and mapping with runtime analysis. This paper presents the first approximation of a Web Services platform-based architecture (GITIRBio) that acts as a distributed front-end system for autonomous and assisted processing of parallel bioinformatics pipelines that has been validated using multiple sequences. Additionally, this platform allows integration with semantic repositories of genes for search annotations. GITIRBio is available at: http://c-head.ucaldas.edu.co:8080/gitirbio
doi:10.1515/jib-2015-255 fatcat:oryskrimozhcdatuermryq7mqy