Reactome Pengine: a web-logic API to the Homo sapiens reactome

Samuel R Neaves, Sophia Tsoka, Louise A C Millard, Oliver Stegle
2018 Bioinformatics  
General rights This document is made available in accordance with publisher policies. Please cite only the published version using the reference above. Full terms of use are available: Abstract Summary: Existing ways of accessing data from the Reactome database are limited. Either a researcher is restricted to particular queries defined by a web application programming interface (API) or they have to download the whole database. Reactome Pengine is a web service providing a logic
more » ... ed API to the human reactome. This gives researchers greater flexibility in data access than existing APIs, as users can send their own small programs (alongside queries) to Reactome Pengine. Availability and implementation: The server and an example notebook can be found at https:// apps.nms.kcl.ac.
doi:10.1093/bioinformatics/bty181 pmid:29617950 pmcid:PMC6084589 fatcat:suo5ixv3yfbgfpygzcycd57ene