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ipADMIXTURE: R package for inferring sub-population clusters based on genetic admixture [article]

Chainarong Amornbunchornvej, Pongsakorn Wangkumhang, Sissades Tongsima
2020 bioRxiv   pre-print

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ipADMIXTURE is an R package to infer clusters and their phylogeny based on Q matrices of genetic admixture analysis. It is the first software of its kind to infer not just only clusters, but also the hierarchy of sub-populations w.r.t. the minimum number of ancestors that split any pair of clusters apart. Since inputs of the package, Q matrices, can be obtained from well-known software (ADMIXTURE, STRUCTURE, etc.) and the Q matrices are mandatory information that are used in genetic population
more » ... tructure study, our package has a potential to help scientists and researchers to find deeper explanation of admixture analysis in their studies. Our package comes with a user-friendly interface to make the software accessible for everyone.
doi:10.1101/2020.03.21.001206 fatcat:tyojr6nf7nbvla4s6vqfzp6xwm
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Chainarong Amornbunchornvej, Pongsakorn Wangkumhang, Sissades Tongsima. "ipADMIXTURE: R package for inferring sub-population clusters based on genetic admixture." bioRxiv (2020)