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pysradb: A Python package to query next-generation sequencing metadata and data from NCBI Sequence Read Archive
2019
F1000Research
The NCBI Sequence Read Archive (SRA) is the primary archive of next-generation sequencing datasets. SRA makes metadata and raw sequencing data available to the research community to encourage reproducibility and to provide avenues for testing novel hypotheses on publicly available data. However, methods to programmatically access this data are limited. We introduce the Python package, pysradb, which provides a collection of command line methods to query and download metadata and data from SRA,
doi:10.12688/f1000research.18676.1
pmid:31114675
pmcid:PMC6505635
fatcat:c3xt7xuqurabdmha3yyaracff4