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Polarization properties of electromagnetic Gaussian Schell-model beams propagating through the anisotropic non-Kolmogorov turbulence of marine-atmosphere channel are studied based on the cross-spectral density matrix. Detailed analysis shows that the average polarization decreases with increasing the spectral index, inner scale of turbulence and generalized refractive-index structure parameter. We find the effects of anisotropic turbulence on the average polarization is less than that of thedoi:10.13164/re.2016.0652 fatcat:3m7kf4motvh3xho2avb5sqqwza