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3D-stacked many-core architecture for biological sequence analysis problems
2015
2015 International Conference on Embedded Computer Systems: Architectures, Modeling, and Simulation (SAMOS)
Sequence analysis plays extremely important role in bioinformatics, and most applications of which have compute intensive kernels consuming over 70% of total execution time. By exploiting the compute intensive execution stages of popular sequence analysis applications, we present and evaluate a VLSI architecture with a focus on those that target at biological sequences directly, including pairwise sequence alignment, multiple sequence alignment, database search, and short read sequence
doi:10.1109/samos.2015.7363678
dblp:conf/samos/LiuHP15
fatcat:xysaiokksbem7cqlnvpqahr7be