StreamFlow: cross-breeding cloud with HPC [article]

Iacopo Colonnelli, Barbara Cantalupo, Ivan Merelli, Marco Aldinucci
2020 arXiv   pre-print
Workflows are among the most commonly used tools in a variety of execution environments. Many of them target a specific environment; few of them make it possible to execute an entire workflow in different environments, e.g. Kubernetes and batch clusters. We present a novel approach to workflow execution, called StreamFlow, that complements the workflow graph with the declarative description of potentially complex execution environments, and that makes it possible the execution onto multiple
more » ... s not sharing a common data space. StreamFlow is then exemplified on a novel bioinformatics pipeline for single-cell transcriptomic data analysis workflow.
arXiv:2002.01558v2 fatcat:jywyqbvx6vggxfwjzv5mkvgaxe