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Exploiting bounded signal flow for graph orientation based on cause-effect pairs
2011
Algorithms for Molecular Biology
We consider the following problem: Given an undirected network and a set of sender-receiver pairs, direct all edges such that the maximum number of "signal flows" defined by the pairs can be routed respecting edge directions. This problem has applications in understanding protein interaction based cell regulation mechanisms. Since this problem is NP-hard, research so far concentrated on polynomial-time approximation algorithms and tractable special cases. Results: We take the viewpoint of
doi:10.1186/1748-7188-6-21
pmid:21867496
pmcid:PMC3189099
fatcat:fbe65r4f7bcifgit6zsbcdrcfy