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Lecture Notes in Computer Science
Stored procedures are an important feature of all major database systems that allows to execute application logic within database servers. This paper reports on experiences to implement a popular scientific algorithm, the Basic Local Alignment Search Tool (BLAST), as stored procedures within a relational database. We implemented the un-gapped, nucleotide version of the BLAST algorithm with four different relational database engines, both commercial and open source. In an experimentaldoi:10.1007/11733836_58 fatcat:e2u34mucpbecdper6gxsnpir64