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Two SNP maps were constructed from two chili populations including Capsicum annuum x C. chinense 'PBC932', and C. baccatum 'PBC80' x 'CA1316', aiming to identify QTLs for anthracnose resistance. The 'PBC932'-derived map contained 12 linkage groups (LG) with 214 SNPs and 824 cM coverage. The 'PBC80'-derived map contained 12 LGs with 403 SNPs and 1,270 cM coverage. Based on the 'PBC932' map, two QTLs corresponding to the anthracnose resistances in mature green and ripe fruit stages werefatcat:vn56mqyomrfm3iqj5fz5otazku