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High Performance Systolic Array Core Architecture Design for DNA Sequencer
MATEC Web of Conferences
This paper presents a high performance systolic array (SA) core architecture design for Deoxyribonucleic Acid (DNA) sequencer. The core implements the affine gap penalty score Smith-Waterman (SW) algorithm. This time-consuming local alignment algorithm guarantees optimal alignment between DNA sequences, but it requires quadratic computation time when performed on standard desktop computers. The use of linear SA decreases the time complexity from quadratic to linear. In addition, with thedoi:10.1051/matecconf/201815006009 fatcat:jmuogauqhvg4vepg5232wsoj64