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This work presents a sophisticated information system, the Integrated Analysis Platform (IAP), an approach supporting large-scale image analysis for different species and imaging systems. In its current form, IAP supports the investigation of Maize, Barley and Arabidopsis plants based on images obtained in different spectra. Several components of the IAP system, which are described in this work, cover the complete end-to-end pipeline, starting with the image transfer from the imagingdoi:10.2390/biecoll-jib-2012-191 pmid:22745177 fatcat:cmwfn6vnjzbqrpc4hutx2q2s3i