Scientific Workflow Management in Proteomics

Jeroen S. de Bruin, André M. Deelder, Magnus Palmblad
2012 Molecular & Cellular Proteomics  
Data processing in proteomics can be a challenging endeavor, requiring extensive knowledge of many different software packages, all with different algorithms, data format requirements, and user interfaces. In this article we describe the integration of a number of existing programs and tools in Taverna Workbench, a scientific workflow manager currently being developed in the bioinformatics community. We demonstrate how a workflow manager provides a single, visually clear and intuitive interface
more » ... to complex data analysis tasks in proteomics, from raw mass spectrometry data to protein identifications and beyond.
doi:10.1074/mcp.m111.010595 pmid:22411703 pmcid:PMC3394934 fatcat:zpiodoscwzcfnpsih6psfuthya