MotifOrganizer a scalable model-based motif clustering tool for mammalian genomes

Zhaohui S Qin
2013 Frontiers in Bioscience (Elite Edition)  
Introduction 3. Material and Methods 3.1. Input Data 3.2. BMCES 3.3. MotifOrganizer 3.4. Distance-based clustering approaches 3.5. Quality and uncertainty measures 3.6. Clustering accuracy 3.7. Motif matching tools 4. Results 4.1. JASPAR 4.2. TRANSFAC 4.3. cisRED 5. Discussion 6. Acknowledgement 7. References binding sites using ChIP-Seq data.
doi:10.2741/e659 pmid:23277033 fatcat:yfntc4ykorfxni7nx32edibqge