Agents in bioinformatics, computational and systems biology

E. Merelli, G. Armano, N. Cannata, F. Corradini, M. d'Inverno, A. Doms, P. Lord, A. Martin, L. Milanesi, S. Moller, M. Schroeder, M. Luck
2006 Briefings in Bioinformatics  
The adoption of agent technologies and Multi-Agent Systems constitutes an emerging area in bioinformatics. In this paper, we report on the activity of the Working Group on Agents in Bioinformatics (BIOAGENTS) founded during the first AgentLink III Technical Forum meeting on the 2 nd of July, 2004, in Rome. The meeting provided an opportunity for seeding collaborations between the agent and bioinformatics communities to develop a different (agent-based) approach of computational frameworks both
more » ... or data analysis and management in bioinformatics and for systems modelling and simulation in computational and systems biology. The collaborations gave rise to applications and integrated tools that we summarize and discuss in the context of the state of the art of this area. We investigate on future challenges and argue that the field should still be explored from many perspectives ranging from bio-conceptual languages for agent-based simulation, to the definition of bio-ontology-based declarative languages to be used by information agents, and to the adoption of agents for computational Grids.
doi:10.1093/bib/bbl014 pmid:16772270 fatcat:7w63k7cfmfgctmrouua24vh74m