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SPNConverter: a new link between static and dynamic complex network analysis
2013
Bioinformatics
The signaling Petri net (SPN) simulator, designed to provide insights into the trends of molecules' activity levels in response to an external stimulus, contributes to the systems biology necessity of analyzing the dynamics of large-scale cellular networks. Implemented into the freely available software, BioLayout Express 3D , the simulator is publicly available and easy to use, provided the input files are prepared in the GraphML format, typically using the network editing software, yEd, and
doi:10.1093/bioinformatics/btt421
pmid:23908262
fatcat:nhe55xad5fbetbj7r2ygpvhp64