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CAARS: comparative assembly and annotation of RNA-Seq data
2018
Bioinformatics
RNA sequencing (RNA-Seq) is a widely used approach to obtain transcript sequences in non-model organisms, notably for performing comparative analyses. However, current bioinformatic pipelines do not take full advantage of pre-existing reference data in related species for improving RNA-Seq assembly, annotation and gene family reconstruction. We built an automated pipeline named CAARS to combine novel data from RNA-Seq experiments with existing multi-species gene family alignments. RNA-Seq reads
doi:10.1093/bioinformatics/bty903
pmid:30452539
pmcid:PMC6596894
fatcat:6zgu2kwjpzf7jncddtotwlcwy4