Generating explanations for biomedical queries

ESRA ERDEM, UMUT OZTOK
2013 Theory and Practice of Logic Programming  
AbstractWe introduce novel mathematical models and algorithms to generate (shortest orkdifferent) explanations for biomedical queries, using answer set programming. We implement these algorithms and integrate them inBioQuery-ASP. We illustrate the usefulness of these methods with some complex biomedical queries related to drug discovery, over the biomedical knowledge resourcesPharmGKB,DrugBank,BioGRID, CTD, SIDER,Disease Ontology, andOrphadata.
doi:10.1017/s1471068413000598 fatcat:p4cbxg2mpncnla2uhgiuglbm6y