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Sequence similarity search and sequence alignment methods are fundamental steps in comparative genomics and have a wide spectrum of application in the field of medicine, agriculture and environment. The dynamic programming sequence alignment methods produce optimal alignments but are impractical for a similarity search due to their large running time. Heuristic methods like BLAST run much faster but may not provide optimal alignments. In this paper, we introduce a novel sequence alignmentdoi:10.1007/s13721-015-0096-z dblp:journals/netmahib/KandadiA15 fatcat:3eus3mov75gqdhrz6hqolpxsae