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Computational Systems Bioinformatics
We have developed a feedback algorithm for protein structure alignment between two protein backbones. A web portal implementing this method has been constructed and is freely available for use at http://fpsa.cs.uno.edu/ with a mirror site at http://fpsa.cs.panam.edu/FPSA/. We compare our algorithm with three other, commonly used methods: CE, DaliLite and SSM. The results show that in most cases our algorithm outputs a larger number of aligned positions when the (Cα) RM SD is comparable. Also,doi:10.1142/9781848162648_0010 fatcat:fxzlgwjxvrauxkbkqmd7sgdqai