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The protein folding network
[article]
2004
arXiv
pre-print
The conformation space of a 20-residue antiparallel β-sheet peptide, sampled by molecular dynamics simulations, is mapped to a network. Conformations are nodes of the network, and the transitions between them are links. The conformation space network describes the significant free energy minima and their dynamic connectivity without projections into arbitrarily chosen reaction coordinates. As previously found for the Internet and the World-Wide Web as well as for social and biological networks,
arXiv:q-bio/0403034v1
fatcat:lyujwo3d5bat7ex3i5go3cl5am