Hydrogen bonding and stacking interactions of nucleic acid base pairs: A density-functional-theory based treatment

Marcus Elstner, Pavel Hobza, Thomas Frauenheim, Sándor Suhai, Efthimios Kaxiras
2001 Journal of Chemical Physics  
We extend an approximate density functional theory ͑DFT͒ method for the description of long-range dispersive interactions which are normally neglected by construction, irrespective of the correlation function applied. An empirical formula, consisting of an R Ϫ6 term is introduced, which is appropriately damped for short distances; the corresponding C 6 coefficient, which is calculated from experimental atomic polarizabilities, can be consistently added to the total energy expression of the
more » ... d. We apply this approximate DFT plus dispersion energy method to describe the hydrogen bonding and stacking interactions of nucleic acid base pairs. Comparison to MP2/6-31G*͑0.25͒ results shows that the method is capable of reproducing hydrogen bonding as well as the vertical and twist dependence of the interaction energy very accurately.
doi:10.1063/1.1329889 fatcat:7e5ukouinfgfzbiumplsiyh6xm