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Performance benchmarking of GATK3.8 and GATK4
[article]
2018
bioRxiv
pre-print
Use of the Genome Analysis Toolkit (GATK) continues to be the standard practice in genomic variant calling in both research and the clinic. Recently the toolkit has been rapidly evolving. Significant computational performance improvements have been introduced in GATK3.8 through collaboration with Intel in 2017. The first release of GATK4 in early 2018 revealed significant rewrites in the code base, as the stepping stone toward a Spark implementation. As the software continues to be a moving
doi:10.1101/348565
fatcat:ec44s3e425cnrhgnyfeijbigte