Tysserand - Fast reconstruction of spatial networks from bioimages [article]

Alexis Coullomb, Vera Pancaldi
2020 bioRxiv   pre-print
Motivation: Networks provide a powerful framework to analyze spatial omics experiments. However, we lack tools that integrate several methods to easily reconstruct networks for further analyses with dedicated libraries. In addition, choosing the appropriate method and parameters can be challenging. Summary: We propose tysserand, a Python library to reconstruct spatial networks from spatially resolved omics experiments. It is intended as a common tool where the bioinformatics community can add
more » ... w methods to reconstruct networks, choose appropriate parameters, clean resulting networks and pipe data to other libraries. Availability: tysserand software and tutorials with a Jupyter notebook to reproduce the results are available at https://github.com/VeraPancaldiLab/tysserand
doi:10.1101/2020.11.16.385377 fatcat:r36azedkmvey5ous2kmpveg6ca