A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2009; you can also visit the original URL.
The file type is application/pdf
.
An Intuitive Automated Modelling Interface for Systems Biology
2009
Electronic Proceedings in Theoretical Computer Science
We introduce a natural language interface for building stochastic pi calculus models of biological systems. In this language, complex constructs describing biochemical events are built from basic primitives of association, dissociation and transformation. This language thus allows us to model biochemical systems modularly by describing their dynamics in a narrative-style language, while making amendments, refinements and extensions on the models easy. We demonstrate the language on a model of
doi:10.4204/eptcs.9.9
fatcat:djlqtwum4vdlhpusotbkffzfsa