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Compiler generated systolic arrays for wavefront algorithm acceleration on FPGAs
2008
2008 International Conference on Field Programmable Logic and Applications
Wavefront algorithms, such as the Smith-Waterman algorithm, are commonly used in bioinformatics for exact local and global sequence alignment. These algorithms are highly computationally intensive and are therefore excellent candidates for FPGA-based code acceleration. However, there is no standard form of these algorithms, they are used in a wide variety of situations with various constraints. It is therefore not practical to have a standard kernel that can be mapped to an FPGA, hence the
doi:10.1109/fpl.2008.4630032
dblp:conf/fpl/BuyukkurtN08
fatcat:qas2izyfljcn7kfv2oa5z6hwia