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Topology and prediction of RNA pseudoknots
2011
Computer applications in the biosciences : CABIOS
Motivation: Several dynamic programming algorithms for predicting RNA structures with pseudoknots have been proposed that differ dramatically from one another in the classes of structures considered. Results: Here, we use the natural topological classification of RNA structures in terms of irreducible components that are embeddable in the surfaces of fixed genus. We add to the conventional secondary structures four building blocks of genus one in order to construct certain structures of
doi:10.1093/bioinformatics/btr090
pmid:21335320
fatcat:6aj7j2e4wfbvrm7zm6rvznwtoa