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Metagenomics And Clinical Benchmarking With Low Coverage Oxford Nanopore Data
2015
Zenodo
We have sequenced an equimolar mixture of six bacterial genomes of interest (Pseudomonas fluorescens, Escherichia coli, Halobacillus halophilus, Pseudoalteromonas haloplanktis, Staphylococcus epidermidis, and Micrococcus luteus) at low coverage using the oxford nanopore minION. We checked the utility of these data for metagenomics work using classification tools BLAST and Kraken. We have also sequenced an Enterobacter cloacae sample at low coverage (1.4X coverage of 2D data) to begin
doi:10.5281/zenodo.31274
fatcat:nemhhd6x7ja5dhucgw7pc4bgxy