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OCaml is a functional programming language with strong static types, Hindley-Milner type inference and garbage collection. In this article, we share our experience in prototyping chemoinformatics and structural bioinformatics software in OCaml. First, we introduce the language, list entry points for chemoinformaticians who would be interested in OCaml and give code examples. Then, we list some scientific open source software written in OCaml. We also present recent open source libraries usefuldoi:10.1186/s13321-019-0332-0 pmid:30719579 pmcid:PMC6689879 fatcat:46vtz2gz35a57nngeqckfyg22i