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Lightweight comparison of RNAs based on exact sequence–structure matches
2009
Computer applications in the biosciences : CABIOS
Motivation: Specific functions of ribonucleic acid (RNA) molecules are often associated with different motifs in the RNA structure. The key feature that forms such an RNA motif is the combination of sequence and structure properties. In this article, we introduce a new RNA sequence-structure comparison method which maintains exact matching substructures. Existing common substructures are treated as whole unit while variability is allowed between such structural motifs. Based on a fast
doi:10.1093/bioinformatics/btp065
pmid:19189979
pmcid:PMC2722993
fatcat:klmuwxxs6vawlj7p5cvojtmib4