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SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation
2016
PLoS ONE
FASTA and FASTQ are basic and ubiquitous formats for storing nucleotide and protein sequences. Common manipulations of FASTA/Q file include converting, searching, filtering, deduplication, splitting, shuffling, and sampling. Existing tools only implement some of these manipulations, and not particularly efficiently, and some are only available for certain operating systems. Furthermore, the complicated installation process of required packages and running environments can render these programs
doi:10.1371/journal.pone.0163962
pmid:27706213
pmcid:PMC5051824
fatcat:jx4iuxjzsfhwhai27ozuzh2ghm