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CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures

Barbora Kozlikova, Eva Sebestova, Vilem Sustr, Jan Brezovsky, Ondrej Strnad, Lukas Daniel, David Bednar, Antonin Pavelka, Martin Manak, Martin Bezdeka, Petr Benes, Matus Kotry (+3 others)
2014 Computer applications in the biosciences : CABIOS  

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https://web.archive.org/web/20180730034247/https://watermark.silverchair.com/btu364.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAcEwggG9BgkqhkiG9w0BBwagggGuMIIBqgIBADCCAaMGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQMGJWJ08jnT77ET3GyAgEQgIIBdN4onuzO5fLXCsDDeQWp9CDyfMb6IyqQd4uLwSdh_8nHhZUZnuIM7b8gKXAIOMtdujghVs9tkCp1OWo8cWAOsiA2pveCZvlN8hRk_BUd9k6Lm84MAoQNloH1uzQPaOcpijXUqFspqUg7oKS14jHShwAgcLL3wl7Jl8Wvhuepn47Bx77ICymlKUWBiwXnWkdVRX_g0qS1FtUHhrdh78S-18vKbf5KgFbTCj_qIg5fHvIgDjMYEI73MdycBgViBbKSMFCi1PKdKf4PpVeQ8jjOZNYSH7ikVzbaUe3op0ZuimZYSudvjUr691Lqlfyu5DdMNPf8QzvoGCNealtN52NRBRRg1zVJYb_PzKrTqFpfmNHlQJENwjC-hoBnPqxg5PiZ5cFVGpeh6w5MrJd7qyKa2EUWjen8_uIBTFVwhM5jGxb5Najcj-CVgdBQNxDNLss1-s-CpWJdyGixvgolwtOGWZChGmT7kZou-4P3zK4fYNXCPRiLQw

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The transport of ligands, ions or solvent molecules into proteins with buried binding sites or through the membrane is enabled by protein tunnels and channels. CAVER Analyst is a software tool for calculation, analysis and real-time visualization of access tunnels and channels in static and dynamic protein structures. It provides an intuitive graphic user interface for setting up the calculation and interactive exploration of identified tunnels/channels and their characteristics. Availability
more » ... d Implementation: CAVER Analyst is a multi-platform software written in JAVA. Binaries and documentation are freely available for non-commercial use at
doi:10.1093/bioinformatics/btu364 pmid:24876375 fatcat:ytbqgyu3mzf7bdztn256w6imqy
Citation

Barbora Kozlikova, Eva Sebestova, Vilem Sustr, Jan Brezovsky, Ondrej Strnad, Lukas Daniel, David Bednar, Antonin Pavelka, Martin Manak, Martin Bezdeka, Petr Benes, Matus Kotry, Artur Gora, Jiri Damborsky, Jiri Sochor. "CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures." Computer applications in the biosciences : CABIOS 30.18 (2014) 2684-2685