Use of gene profiling to describe a niche for dendritic cell development

Geneviève Despars, Terence J O'Neill, Helen C O'Neill
2007 Immunology and Cell Biology  
Gene profiling provides a multitude of data on individual gene expression. The view is expressed here that unreplicated data can be used in a descriptive way to compare cell populations in terms of their lineage characteristics and function. In these studies, the aim is to provide a snapshot of gene expression or its absence as a reflection of cell lineage or type, rather than gain a reliable expression measure for all genes expressed. The data set used in this analysis represents gene
more » ... n in the splenic stroma STX3 supportive of dendritic cell hematopoiesis and the lymph node stroma 2RL22, which is non-supportive. These were obtained by hybridization of Affymetrix U74Av2 genechips. The use of P-value selection to identify genes with a high probability of differential expression has been used effectively to detect differentially expressed genes. Genes that relate to a niche environment for hematopoiesis have been selected for further study to make predictions about the cell types of supportive stroma.
doi:10.1038/sj.icb.7100080 pmid:17533411 fatcat:ht4kaxtyznberlfznxjuqmkxuq